Loot spawning inside ground / unobtainable loot

It is noticeable that sometimes loot spawns inside the ground, becoming unobtainable. Usually it wouldn't be an issue, as mostly it's low tier loose loot, but I'd say 80%+ of the black keycard room's loot becomes unobtainable. I've seen a bunch of stims and either ledx/oscope in there that I couldn't pick up, so I want to know.
Is there anything that I could do to get these items to spawn on the ground rather than below it?
I couldn't find any mod that does it, so I am looking for a manual fix too, even if only for the black keycard room on labs.